PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00060.1.g02430.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRF
Protein Properties Length: 163aa    MW: 17985.4 Da    PI: 7.9495
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00060.1.g02430.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.35.5e-2381125145
                             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                     ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r  + ++e
  Zjn_sc00060.1.g02430.1.sm.mkhc  81 EPEPGRCRRTDGKKWRCWRSTIQNEKYCERHMHRGRKRPVQLVVE 125
                                     69************************************9998875 PP

2QLQ54.43.9e-191550237
                             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                    aFTa+Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  Zjn_sc00060.1.g02430.1.sm.mkhc 15 AFTAMQLQELEQQSRVYQYMAARVPVPTHLIFPIWK 50
                                    8*********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-81450IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.8881550IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.2E-121549IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.04981125IPR014977WRC domain
PfamPF088791.1E-1982120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MKALVASITD GAGAAFTAMQ LQELEQQSRV YQYMAARVPV PTHLIFPIWK SVTGASSEGA  60
QKYPTLMGLA TLCLDFGEDP EPEPGRCRRT DGKKWRCWRS TIQNEKYCER HMHRGRKRPV  120
QLVVEDDEPD SASGSKTTPG KADDKSANNM KLDVAAPASV EST
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957654.11e-107PREDICTED: growth-regulating factor 11-like
SwissprotQ6AWX81e-104GRF11_ORYSJ; Growth-regulating factor 11
TrEMBLK3ZW281e-107K3ZW28_SETIT; Uncharacterized protein
STRINGSi030809m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-30growth-regulating factor 5